Merge branch 'dev0'

readthedocs.yml

+# readthedocs.yml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: docs/conf.py
+
+conda:
+  environment: environment.yml
\ No newline at end of file

setup.py

@@ -19,7 +19,8 @@ if USE_CYTHON:
                             libraries=cython_gsl.get_libraries(),
                             library_dirs=[cython_gsl.get_library_dir(), '/usr/local/lib'],
                             include_dirs=[numpy.get_include(),
-                                          cython_gsl.get_cython_include_dir()]),
+                                          cython_gsl.get_cython_include_dir()],
+                            define_macros=[("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")]),
                   Extension(name='st_utils',
                             sources=["robust_speckle_tracking/bin/st_utils.pyx"],
                             language="c",
@@ -28,13 +29,15 @@ if USE_CYTHON:
                             libraries=cython_gsl.get_libraries(),
                             library_dirs=[cython_gsl.get_library_dir(), '/usr/local/lib'],
                             include_dirs=[numpy.get_include(),
-                                          cython_gsl.get_cython_include_dir()])]
+                                          cython_gsl.get_cython_include_dir()],
+                            define_macros=[("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")])]
     extensions = cythonize(extensions, annotate=False, language_level="3",
                            build_dir="build",
                            compiler_directives={'cdivision': True,
                                                 'boundscheck': False,
                                                 'wraparound': False,
-                                                'binding': True})
+                                                'binding': True,
+                                                'embedsignature': True})
 else:
     extensions = [Extension(name="robust_speckle_tracking/bin/*",
                             sources=["robust_speckle_tracking/bin/*.c"],