Add comments for values in Example_sweep file

plot is now saving with CSV file with same name .It doesnt pop up now after reading.

Python_script/prototype.py

@@ -73,10 +73,10 @@ class Measurements:
                 try:
                     while line := file.readline().rstrip():
                         list_of_values = line.split()
-                        next_temp = float(list_of_values[0])
-                        next_hum = float(list_of_values[1])
-                        next_soaking = int(list_of_values[2])
-                        next_reads = int(list_of_values[3])
+                        next_temp = float(list_of_values[0])  # target_temperature
+                        next_hum = float(list_of_values[1])  # target_humidity
+                        next_soaking = int(list_of_values[2])  # soaking_time
+                        next_reads = int(list_of_values[3])  # number of stable readings
 
                         set_const_response = self.chamber.set_const((next_temp, next_hum))
                         print(set_const_response)
@@ -109,7 +109,6 @@ class Measurements:
                                     magnitudes_queue.append(self.calculate_mean_magnitude(data.s21))
                                 else:
                                     magnitudes_queue.clear()
-
                                 # check cable stability parameters
                                 self.magnitude_stable = False
                                 if len(magnitudes_queue) >= number_of_soaking_reads:
@@ -137,8 +136,8 @@ class Measurements:
 
                                 if self.temperature_stable and self.humidity_stable and self.magnitude_stable and\
                                         self.phase_stable:
-                                    self.reference_magnitude = magnitudes_queue[-1]
-                                    self.reference_phase = phase_queue[-1]
+                                    reference_magnitude = magnitudes_queue[-1]
+                                    reference_phase = phase_queue[-1]
                                     print('SOAKING FINISHED!')
                                     break
                                 else:
@@ -153,30 +152,31 @@ class Measurements:
                                 self.humidity_stable = self.calculate_humidity_stability(next_hum, float(data.hum))
                                 mag = self.calculate_mean_magnitude(data.s21)
                                 phase = self.calculate_mean_phase(data.s21)
-                                self.magnitude_stable = (self.reference_magnitude-self.max_delta_mag <= mag) and\
-                                                        (mag <= self.reference_magnitude+self.max_delta_mag)
-                                self.phase_stable = (self.reference_phase-self.max_delta_phase <= phase) and\
-                                                    (phase <= self.reference_phase+self.max_delta_phase)
-                                print('phase '+str(phase)+', ref_phase '+str(self.reference_phase)+', max_delta '+str(self.max_delta_phase))
+                                self.magnitude_stable = (reference_magnitude-self.max_delta_mag <= mag) and\
+                                                        (mag <= reference_magnitude+self.max_delta_mag)
+                                self.phase_stable = (reference_phase-self.max_delta_phase <= phase) and\
+                                                    (phase <= reference_phase+self.max_delta_phase)
 
                                 supposedly_stable_measurements.append([data, self.cook_up_equi_indicator()])
-                                print('Read no.', str(i))
-                                if (self.temperature_stable and self.humidity_stable and self.magnitude_stable and\
+
+                                if (self.temperature_stable and self.humidity_stable and self.magnitude_stable and
                                         self.phase_stable):
                                     self.clock.sleep(self.sleep_time)
                                 else:
-                                    print('HELP, I am lost!')
                                     all_measurements_stable = False
                                     break
 
-                            for [d, measurement_equi]  in supposedly_stable_measurements:
-                                if (all_measurements_stable):
+                            for [d, measurement_equi] in supposedly_stable_measurements:
+                                if all_measurements_stable:
                                     equi = TEMPERATURE_STABLE | HUMIDITY_STABLE | MAGNITUDE_STABLE | PHASE_STABLE | MEASUREMENT_STABLE
                                     do_another_measurement = False
                                 else:
                                     equi = measurement_equi
                                 self.write_data(writer, next_temp, next_hum, d, equi)
-
+                                parser1 = ArgumentParser()
+                                parser1.add_argument("-p", "--plot",
+                                                    help="graph plotting", metavar="ADDR",
+                                                    required=True)
                 except KeyboardInterrupt:
                     pass
 
@@ -266,7 +266,7 @@ class Measurements:
 
     def plot_output(self, output_file):
         csv_data = pd.read_csv(output_file)
-        fig, ax1 = plt.subplots(2, figsize=(8, 8))
+        fig, ax1 = plt.subplots(2, figsize=(12, 10))
         fig.suptitle("Graphical representation of chamber output", color="red")
 
         path_collection01 = ax1[0].scatter(csv_data.TIMESTAMP, csv_data.S11_PHASE, c='red', marker='<', label='Phase')
@@ -305,6 +305,9 @@ class Measurements:
         labels = [pc.get_label() for pc in all_path_collections]
         ax1[1].legend(all_path_collections, labels, loc='lower right')
 
+        fig.savefig(time.strftime("%Y_%m_%d-%H_%M_%S") + 'graph.png')
+        plt.close(fig)
+
         plt.show()
 
     def calculate_temperature_stability(self, target_temp, readback_temp):