schema to all format converter

scripts/convert_yamlschema_to_all_formats.py

+import argparse
+import os
+
+from linkml.generators.jsonschemagen import JsonSchemaGenerator 
+from linkml.generators.jsonldgen import JSONLDGenerator
+from linkml.generators.owlgen import OwlSchemaGenerator
+def convert_linkml_to_jsonschema(yaml_schema_path, json_schema_output):
+    # Load the schema using SchemaView
+    
+    json_schema = JsonSchemaGenerator(yaml_schema_path).serialize()
+    json_ld = JSONLDGenerator(yaml_schema_path).serialize()
+    owl_shema = OwlSchemaGenerator(yaml_schema_path).serialize()
+    # Save JSON schema to file
+    file_name=json_schema_output.split(".")[0]
+    with open(f'{file_name}.json', 'w') as file:
+        file.write(json_schema)
+    with open(f'{file_name}.jsonld', 'w') as file:
+        file.write(json_ld)
+    with open(f'{file_name}.owl', 'w') as file:
+        file.write(owl_shema)
+
+def main():
+    parser = argparse.ArgumentParser(description="Convert a LinkML YAML schema to JSON schema.")
+    parser.add_argument('-i', '--input', type=str, default='scicat/scicat.yaml', help='The path to the LinkML YAML schema file to be read (default: schemas/schema.yaml).')
+    parser.add_argument('-o', '--output', type=str, default='scicat/output/scicat.json', help='The path to save the JSON schema output (default: output/schema.json).')
+
+    args = parser.parse_args()
+
+    # Ensure output directory exists
+    os.makedirs(os.path.dirname(args.output), exist_ok=True)
+
+    # Convert LinkML YAML schema to JSON schema
+    convert_linkml_to_jsonschema(args.input, args.output)
+    print(f"LinkML YAML schema successfully converted and saved to {args.output}")
+
+if __name__ == "__main__":
+    main()
+
+
+
+# import yaml
+# import argparse
+# import json
+# from linkml_runtime.utils.schemaview import SchemaView
+# from linkml_runtime.linkml_model.meta import SchemaDefinition
+
+# # from linkml.generators.jsonschemagen import 
+# from linkml.generators.jsonschemagen import JsonSchemaGenerator
+
+# def convert_linkml_to_jsonschema(yaml_schema_path, json_schema_output):
+#     # Load the schema using SchemaView
+#     schema_view = SchemaView(yaml_schema_path)
+    
+
+#     json_schema = JsonSchemaGenerator(schema_view.schema).serialize()
+    
+#     # Save JSON schema to file
+#     with open(json_schema_output, 'w') as file:
+#         file.write(json_schema)
+# def main():
+#     # Initialize the parser
+#     parser = argparse.ArgumentParser(description="Gen json schema")
+
+#     # Add the file argument
+#     parser.add_argument('-i', '--input', type=str, default='schema.yaml', help='The path to the LinkML YAML schema file to be read (default: schema.yaml).')
+#     parser.add_argument('-o', '--output', type=str, default='schema.json', help='The path to save the JSON schema output (default: schema.json).')
+#     # Parse the arguments
+#     args = parser.parse_args()
+
+#     # Read and print the file content
+#     schema_view = convert_linkml_to_jsonschema(args.input,args.output)
+#     # json_schema = JsonSchemaGenerator(schema_view.schema).serialize()
+#     # with open("file.json", "w") as outfile: 
+#     #     json.dump(json_schema, outfile)
+
+# if __name__ == "__main__":
+#     main()
+