Update all files to point at include subdir

include/pinkIndexer/Backprojection.h

 #pragma once
 
-#include "ExperimentSettings.h"
+#include <pinkIndexer/ExperimentSettings.h>
 #include <Eigen/Dense>
 
 namespace pinkIndexer

include/pinkIndexer/BadInputException.h

@@ -8,7 +8,7 @@
 #ifndef BADINPUTEXCEPTION_H_
 #define BADINPUTEXCEPTION_H_
 
-#include <CustomException.h>
+#include <pinkIndexer/CustomException.h>
 
 namespace pinkIndexer
 {

include/pinkIndexer/ExperimentSettings.h

@@ -8,8 +8,8 @@
 #ifndef EXPERIMENTSETTINGS_H_
 #define EXPERIMENTSETTINGS_H_
 
-#include "Lattice.h"
-#include "WrongUsageException.h"
+#include <pinkIndexer/Lattice.h>
+#include <pinkIndexer/WrongUsageException.h>
 
 namespace pinkIndexer
 {

include/pinkIndexer/PinkIndexer.h

 #pragma once
 
 
-#include "Backprojection.h"
-#include "ExperimentSettings.h"
-#include "Lattice.h"
-#include "Refinement.h"
-#include "SimpleDiffractionPatternPrediction.h"
-#include "SimpleProjection.h"
-#include "Sinogram.h"
+#include <pinkIndexer/Backprojection.h>
+#include <pinkIndexer/ExperimentSettings.h>
+#include <pinkIndexer/Lattice.h>
+#include <pinkIndexer/Refinement.h>
+#include <pinkIndexer/SimpleDiffractionPatternPrediction.h>
+#include <pinkIndexer/SimpleProjection.h>
+#include <pinkIndexer/Sinogram.h>
 #include <Eigen/Dense>
 #include <stdint.h>
 

include/pinkIndexer/ReciprocalToRealProjection.h

 #pragma once
 
-#include "ExperimentSettings.h"
+#include <pinkIndexer/ExperimentSettings.h>
 #include <Eigen/Dense>
 
 namespace pinkIndexer

include/pinkIndexer/Refinement.h

 #pragma once
 
 
-#include "Backprojection.h"
-#include "Lattice.h"
-#include "ReciprocalToRealProjection.h"
+#include <pinkIndexer/Backprojection.h>
+#include <pinkIndexer/Lattice.h>
+#include <pinkIndexer/ReciprocalToRealProjection.h>
 #include <Eigen/Dense>
 #include <vector>
 

include/pinkIndexer/ReflectionsInRangeFinder.h

 #pragma once
 
-#include "BadInputException.h"
-#include "ExperimentSettings.h"
-#include "eigenSTLContainers.h"
+#include <pinkIndexer/BadInputException.h>
+#include <pinkIndexer/ExperimentSettings.h>
+#include <pinkIndexer/eigenSTLContainers.h>
 
 namespace pinkIndexer
 {

include/pinkIndexer/SimpleDiffractionPatternPrediction.h

 #pragma once
 
 
-#include "SimpleProjection.h"
+#include <pinkIndexer/SimpleProjection.h>
 #include <Eigen/Dense>
 
 namespace pinkIndexer

include/pinkIndexer/SimpleProjection.h

 #pragma once
 
-#include "ReciprocalToRealProjection.h"
+#include <pinkIndexer/ReciprocalToRealProjection.h>
 #include <Eigen/Dense>
 
 namespace pinkIndexer

include/pinkIndexer/Sinogram.h

@@ -2,9 +2,9 @@
 
 #define EIGEN_DONT_PARALLELIZE
 
-#include "Lattice.h"
-#include "ReflectionsInRangeFinder.h"
-#include "eigenSTLContainers.h"
+#include <pinkIndexer/Lattice.h>
+#include <pinkIndexer/ReflectionsInRangeFinder.h>
+#include <pinkIndexer/eigenSTLContainers.h>
 #include <Eigen/Dense>
 #include <string>
 #include <vector>

include/pinkIndexer/WrongUsageException.h

@@ -8,7 +8,7 @@
 #ifndef WRONGUSAGEEXCEPTION_H_
 #define WRONGUSAGEEXCEPTION_H_
 
-#include <CustomException.h>
+#include <pinkIndexer/CustomException.h>
 
 namespace pinkIndexer
 {

include/pinkIndexer/eigenDiskImport.h

@@ -8,7 +8,7 @@
 #ifndef EIGENDISKIMPORT_H_
 #define EIGENDISKIMPORT_H_
 
-#include "BadInputException.h"
+#include <pinkIndexer/BadInputException.h>
 #include <Eigen/Dense>
 #include <algorithm>
 #include <fstream>

src/Backprojection.cpp

 
-#include "Backprojection.h"
+#include <pinkIndexer/Backprojection.h>
 
 
 using namespace std;

src/Chronometer.cpp

-#include "Chronometer.h"
+#include <pinkIndexer/Chronometer.h>
 
 #include <iostream>
 #include <string>

src/ExperimentSettings.cpp

@@ -5,7 +5,7 @@
  *      Author: Yaro
  */
 
-#include <ExperimentSettings.h>
+#include <pinkIndexer/ExperimentSettings.h>
 #include <assert.h>
 #include <sstream>
 

src/Lattice.cpp

@@ -5,7 +5,7 @@
  *      Author: Yaro
  */
 
-#include <Lattice.h>
+#include <pinkIndexer/Lattice.h>
 #include <algorithm>
 #include <assert.h>
 #include <inttypes.h>

src/PinkIndexer.cpp

-#include "PinkIndexer.h"
+#include <pinkIndexer/PinkIndexer.h>
 
 #include <algorithm>
 #include <fstream>

src/ReciprocalToRealProjection.cpp

-#include "ReciprocalToRealProjection.h"
+#include <pinkIndexer/ReciprocalToRealProjection.h>
 
 namespace pinkIndexer
 {

src/Refinement.cpp

 #define _USE_MATH_DEFINES
 #include <cmath>
 
-#include "Refinement.h"
-#include "WrongUsageException.h"
-#include "eigenSTLContainers.h"
+#include <pinkIndexer/Refinement.h>
+#include <pinkIndexer/WrongUsageException.h>
+#include <pinkIndexer/eigenSTLContainers.h>
 #include <iostream>
 #include <limits>
 

src/ReflectionsInRangeFinder.cpp

-#include "ReflectionsInRangeFinder.h"
+#include <pinkIndexer/ReflectionsInRangeFinder.h>
 
 #include <algorithm>
 #include <numeric>