Peak finding and indexing result from the command line shows in wrong place in the GUI.
This is the result from the GUI indexing. This is the result loaded from a stream file. All peaks are plotted in the top left panel wrongly. This is the correspoinding part of the stream file.
----- Begin chunk -----
Image filename: /home/szsdk/P2746/exp_data/emc/shift4_5nm_corr/000.h5
Event: //184
Image serial number: 185
hit = 1
indexed_by = spind-nolatt-nocell
n_indexing_tries = 1
photon_energy_eV = 13600.000000
beam_divergence = 0.00e+00 rad
beam_bandwidth = 1.00e-08 (fraction)
average_camera_length = 0.122668 m
num_peaks = 13
peak_resolution = 7.591280 nm^-1 or 1.317301 A
Peaks from peak search
fs/px ss/px (1/d)/nm^-1 Intensity Panel
18.31 335.09 4.05 31.77 p3a5
83.65 382.81 2.87 12.81 p3a5
17.95 258.32 4.67 10.90 p4a4
68.44 431.74 2.31 16.75 p4a6
93.86 457.91 2.31 222.34 p4a7
14.28 503.79 3.28 449.12 p5a7
74.44 347.50 3.29 17.71 p8a5
40.37 399.17 2.86 29.81 p8a6
121.39 412.64 3.68 34.77 p9a6
45.73 421.91 4.66 21.65 p9a6
99.47 497.92 7.59 30.75 p11a7
108.28 282.16 4.69 219.59 p15a4
9.21 365.93 2.88 6.92 p15a5
End of peak list
--- Begin crystal
Cell parameters 0.60464 0.60701 0.59255 nm, 87.84706 89.05789 90.15882 deg
astar = +1.1403778 +1.1744891 -0.2369627 nm^-1
bstar = +0.0623154 -0.3762267 -1.6038898 nm^-1
cstar = -1.2424943 +1.1175667 -0.2451144 nm^-1
lattice_type = triclinic
centering = P
unique_axis = ?
profile_radius = 0.02000 nm^-1
predict_refine/det_shift x = 0.000 y = 0.000 mm
diffraction_resolution_limit = 0.00 nm^-1 or inf A
num_reflections = 0
num_saturated_reflections = 0
num_implausible_reflections = 0
Reflections measured after indexing
h k l I sigma(I) peak background fs/px ss/px panel
End of reflections
--- End crystal
----- End chunk -----
The geom
file is attached.
agipd_2746_v1.geom.zip