add -f to LN_S

debian/patches/fix-HDFFV-10745.patch

-From: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
-Date: Thu, 19 Sep 2019 19:39:22 +0200
-Subject: fix-HDFFV-10745
-
+Index: hdf5/java/src/jni/h5pFCPLImp.c
 ===================================================================
----
- java/src/jni/h5pFCPLImp.c | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/java/src/jni/h5pFCPLImp.c b/java/src/jni/h5pFCPLImp.c
-index 34ac065..cc7c264 100644
---- a/java/src/jni/h5pFCPLImp.c
-+++ b/java/src/jni/h5pFCPLImp.c
+--- hdf5.orig/java/src/jni/h5pFCPLImp.c
++++ hdf5/java/src/jni/h5pFCPLImp.c
 @@ -240,7 +240,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
  
  done:

debian/patches/fix-unaligned-accesses.patch

-From: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
-Date: Thu, 19 Sep 2019 19:39:22 +0200
-Subject: fix-unaligned-accesses
+Package: libhdf5-100
+Version: 1.10.0-patch1+docs-3
+Tags: upstream patch
+User: debian-sparc@lists.debian.org
+Usertags: sparc64
+X-Debbugs-Cc: debian-sparc@lists.debian.org, Ghislain Vaillant <ghisvail@gmail.com>
+Control: affects -1 src:h5py
 
 Hi,
 Currently libhdf5-100 performs unaligned memory accesses on sparc64 in
@@ -34,15 +38,10 @@ free to forward this patch upstream if you deem it acceptable.
 
 Regards,
 James
----
- config/cmake/ConversionTests.c |  8 +++----
- src/H5Tvlen.c                  | 47 ++++++++++++++++++++++++++++++++++--------
- 2 files changed, 42 insertions(+), 13 deletions(-)
-
-diff --git a/config/cmake/ConversionTests.c b/config/cmake/ConversionTests.c
-index 6d597a0..cc071b5 100644
---- a/config/cmake/ConversionTests.c
-+++ b/config/cmake/ConversionTests.c
+Index: hdf5/config/cmake/ConversionTests.c
+===================================================================
+--- hdf5.orig/config/cmake/ConversionTests.c
++++ hdf5/config/cmake/ConversionTests.c
 @@ -259,13 +259,13 @@ main ()
  
      char *chp = "beefs";
@@ -69,11 +68,11 @@ index 6d597a0..cc071b5 100644
      if (vlp2->len != vl.len || vlp2->p != vl.p) {
          free (vlp);
          return 1;
-diff --git a/src/H5Tvlen.c b/src/H5Tvlen.c
-index ba31cd1..7bbf451 100644
---- a/src/H5Tvlen.c
-+++ b/src/H5Tvlen.c
-@@ -1044,35 +1044,64 @@ H5T_vlen_reclaim_recurse(void *elem, const H5T_t *dt, H5MM_free_t free_func, voi
+Index: hdf5/src/H5Tvlen.c
+===================================================================
+--- hdf5.orig/src/H5Tvlen.c
++++ hdf5/src/H5Tvlen.c
+@@ -1044,35 +1044,64 @@ H5T_vlen_reclaim_recurse(void *elem, con
          case H5T_VLEN:
              /* Recurse on the VL information if it's VL, compound, enum or array, then free VL sequence */
              if(dt->shared->u.vlen.type == H5T_VLEN_SEQUENCE) {

debian/patches/relax-version-check.patch

-From: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
-Date: Thu, 19 Sep 2019 19:39:22 +0200
-Subject: relax-version-check
-
+Description: remove check on patch version
+ hopefully changes in that number always are compatible.
+ Without this every bugfix update would require a full transition as it will
+ abort when the version does not match exactly.
+ The version check will be executed with compile time values on every file
+ access see e.g. H5F_ACC_RDONLY in src/H5Fpublic.h
+Author: Julian Taylor <jtaylor@ubuntu.com>
+Bug-Debian: http://bugs.debian.org/693610
+Index: hdf5/src/H5.c
 ===================================================================
----
- src/H5.c                     |  3 +--
- test/testcheck_version.sh.in | 17 +++++++++++++----
- 2 files changed, 14 insertions(+), 6 deletions(-)
-
-diff --git a/src/H5.c b/src/H5.c
-index 5e342ff..064e58d 100644
---- a/src/H5.c
-+++ b/src/H5.c
-@@ -751,8 +751,7 @@ H5check_version(unsigned majnum, unsigned minnum, unsigned relnum)
+--- hdf5.orig/src/H5.c
++++ hdf5/src/H5.c
+@@ -751,8 +751,7 @@ H5check_version(unsigned majnum, unsigne
              disable_version_check = (unsigned int)HDstrtol (s, NULL, 0);
      }
  
@@ -22,10 +20,10 @@ index 5e342ff..064e58d 100644
          switch (disable_version_check) {
  	case 0:
  	    HDfprintf(stderr, "%s%s", version_mismatch_warning,
-diff --git a/test/testcheck_version.sh.in b/test/testcheck_version.sh.in
-index a5641f5..0e5ad0a 100644
---- a/test/testcheck_version.sh.in
-+++ b/test/testcheck_version.sh.in
+Index: hdf5/test/testcheck_version.sh.in
+===================================================================
+--- hdf5.orig/test/testcheck_version.sh.in
++++ hdf5/test/testcheck_version.sh.in
 @@ -152,8 +152,12 @@ TESTING() {
  	esac
  	case "$h5DisableVersion" in

debian/patches/reproducibility.patch

-From: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
-Date: Thu, 19 Sep 2019 19:39:22 +0200
-Subject: reproducibility
-
+Index: hdf5/configure.ac
 ===================================================================
----
- configure.ac | 6 +++---
- 1 file changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/configure.ac b/configure.ac
-index 4ac4a5b..2b7fc24 100644
---- a/configure.ac
-+++ b/configure.ac
+--- hdf5.orig/configure.ac
++++ hdf5/configure.ac
 @@ -170,7 +170,7 @@ AC_MSG_RESULT([done])
  ## Save system information for the library settings file.
  ##
@@ -20,7 +11,7 @@ index 4ac4a5b..2b7fc24 100644
  
  ## ----------------------------------------------------------------------
  ## Some platforms have broken basename, and/or xargs programs. Check
-@@ -3004,10 +3004,10 @@ H5_VERSION="`cut -d' ' -f3 $srcdir/README.txt | head -1`"
+@@ -3004,10 +3004,10 @@ H5_VERSION="`cut -d' ' -f3 $srcdir/READM
  AC_SUBST([H5_VERSION])
  
  ## Configuration date