Commits · 469efb904b59f137ac9e85e5ff23edd0c113de5c · Oleksii Turkot / CrystFEL

22 Feb, 2012 40 commits
- Move a load more stuff into libcrystfel · 469efb90
  Thomas White authored Nov 15, 2011
  
  469efb90
- Introduce "libcrystfel" · 38089071
  Thomas White authored Nov 15, 2011
  
  38089071
- Fix a potential memory leak · 404c6122
  Thomas White authored Nov 14, 2011
  
  404c6122
- Check that geometry size matches image size · 92c8e54d
  Thomas White authored Nov 14, 2011
  
  92c8e54d
- Free "copy HDF5 field" list · 1bad219c
  Thomas White authored Nov 14, 2011
  
  1bad219c
- indexamajig: Pass the beam parameters properly · 42e6b638
  Thomas White authored Nov 14, 2011
  
  42e6b638
- Update makefiles · 69632c5f
  Thomas White authored Nov 10, 2011
  
  69632c5f
- Add scripts/gen-sfs for calculating scattering · f70d3c15
  Thomas White authored Nov 10, 2011
  
  f70d3c15
- partialator: Use an I/sig(I) cutoff for determining scalability · e21d69a9
  Thomas White authored Nov 09, 2011
  
  e21d69a9
- partialator: Use all reflections (not just the ones found the first time around) · 667c06f1
  Thomas White authored Nov 09, 2011
  
  667c06f1
- compare_hkl: Record actual number of (common) reflections used for Rsplit in each shell · 22d4f329
  Thomas White authored Nov 09, 2011
  
  22d4f329
- get_hkl: Only expand phases we have · 97193f88
  Thomas White authored Nov 09, 2011
  
  97193f88
- Use the right scaling factor for Rsplit · 96e73c46
  Thomas White authored Nov 09, 2011
  
  96e73c46
- Do Poisson on photon counts, not ADU · eb7d6184
  Thomas White authored Nov 08, 2011
  
  eb7d6184
- Fussiness · 58881c8f
  Thomas White authored Nov 07, 2011
  
  58881c8f
- Better sanity check (Miller indices should be ~integers) · faa1558c
  Richard A. Kirian authored Nov 01, 2011 and Thomas White committed Feb 22, 2012
  
  faa1558c
- Add option to limit peak SNR · b7da56e7
  Richard A. Kirian authored Oct 16, 2011 and Thomas White committed Feb 22, 2012
  
  b7da56e7
- Threshold SNR in peak search · 1231eaed
  Richard A. Kirian authored Oct 16, 2011 and Thomas White committed Feb 22, 2012
  
  1231eaed
- partial_sim: Initialise "copyme" to NULL · 1074dc9f
  Thomas White authored Nov 01, 2011
  
  1074dc9f
- indexamajig: Add --copy-hdf5-field option for copying something to the HDF5 file · 42d10caa
  Thomas White authored Oct 13, 2011
  
  42d10caa
- Avoid NaN shifts of divergence · d8a4f750
  Thomas White authored Oct 12, 2011
  
  d8a4f750
- Style · 7fbf10ef
  Thomas White authored Oct 12, 2011
  
  7fbf10ef
- Take number of dud images into account for partiality graph · c4e91973
  Thomas White authored Oct 12, 2011
  
  c4e91973
- Formatting fussiness · 8dc02bb9
  Thomas White authored Oct 12, 2011
  
  8dc02bb9
- Rationalise handling of phases in RefList · 13257c9d
  Thomas White authored Oct 12, 2011
  
  13257c9d
- Add a FIXME · c479780b
  Thomas White authored Oct 12, 2011
  
  c479780b
- process_hkl: Remove old debug · c76d8e9c
  Thomas White authored Oct 11, 2011
  
  c76d8e9c
- Test divergence gradient · dffe82f6
  Thomas White authored Oct 07, 2011
  
  dffe82f6
- Add weighting scheme · 055fc06b
  Thomas White authored Oct 07, 2011
  
  055fc06b
- Clamp divergence at zero · 3c21788d
  Thomas White authored Oct 07, 2011
  
  3c21788d
- "Fix" divergence gradient · 986f4673
  Thomas White authored Oct 07, 2011
  
  986f4673
- Total divergence is made up from rocking half the divergence in opposite directions · 1ad18276
  Thomas White authored Oct 07, 2011
  
  1ad18276
- Move "cubeit" to contrib · 3f7f7b74
  Thomas White authored Oct 06, 2011
  
  3f7f7b74
- Remove unhelpful warning message · 0537bcd8
  Thomas White authored Oct 06, 2011
  
  0537bcd8
- Show sample standard deviation on intensity histograms · 6a39404f
  Thomas White authored Oct 06, 2011
```
Not the standard deviation of the mean, i.e. multiply by sqrt(N) for display
```
  6a39404f
- Calculate reflection ESDs, apply minimum redundancy and show ESD on histograms · 08fe4082
  Thomas White authored Oct 05, 2011
  
  08fe4082
- Reduce number of bins in intensity histograms · 7d7cf5b2
  Thomas White authored Oct 05, 2011
  
  7d7cf5b2
- Fussiness · 1e94b9a8
  Thomas White authored Oct 05, 2011
  
  1e94b9a8
- Mark the full intensity position on the intensity histogram · 08e2e535
  Thomas White authored Oct 05, 2011
  
  08e2e535
- Add comment · d5965bf9
  Thomas White authored Oct 05, 2011
  
  d5965bf9