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Commit 51f5ed04 authored by Thomas White's avatar Thomas White
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Restore bandwidth and subsampling to pattern_sim

parent b9d70f03
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data/diffraction.cl
View file @ 51f5ed04
......@@ -33,7 +33,7 @@ const sampler_t sampler_c = CLK_NORMALIZED_COORDS_TRUE
float4 get_q(float fs, float ss, float res, float clen, float k,
float *ttp, float corner_x, float corner_y,
float corner_x, float corner_y,
float fsx, float fsy, float ssx, float ssy)
{
float rx, ry, r;
......@@ -51,7 +51,6 @@ float4 get_q(float fs, float ss, float res, float clen, float k,
r = sqrt(pow(rx, 2.0f) + pow(ry, 2.0f));
tt = atan2(r, clen);
*ttp = tt;
az = atan2(ry, rx);
......@@ -211,7 +210,7 @@ float molecule_factor(global float *intensities, global float *flags,
}
kernel void diffraction(global float *diff, global float *ttp, float k,
kernel void diffraction(global float *diff, float k,
int w, float corner_x, float corner_y,
float res, float clen, float16 cell,
global float *intensities,
......@@ -219,7 +218,8 @@ kernel void diffraction(global float *diff, global float *ttp, float k,
read_only image2d_t func_b,
read_only image2d_t func_c,
global float *flags,
float fsx, float fsy, float ssx, float ssy)
float fsx, float fsy, float ssx, float ssy,
float xo, float yo)
{
float tt;
float fs, ss;
......@@ -230,11 +230,11 @@ kernel void diffraction(global float *diff, global float *ttp, float k,
int idx;
/* Calculate fractional coordinates in fs/ss */
fs = convert_float(get_global_id(0));
ss = convert_float(get_global_id(1));
fs = convert_float(get_global_id(0)) + xo;
ss = convert_float(get_global_id(1)) + yo;
/* Get the scattering vector */
q = get_q(fs, ss, res, clen, k, &tt,
q = get_q(fs, ss, res, clen, k,
corner_x, corner_y, fsx, fsy, ssx, ssy);
/* Calculate the diffraction */
......@@ -245,5 +245,4 @@ kernel void diffraction(global float *diff, global float *ttp, float k,
/* Write the value to memory */
idx = convert_int_rtz(fs) + w*convert_int_rtz(ss);
diff[idx] = I_molecule * I_lattice;
ttp[idx] = tt;
}
src/diffraction-gpu.c
View file @ 51f5ed04
......@@ -167,57 +167,13 @@ static int set_arg_mem(struct gpu_context *gctx, int idx, cl_mem val)
}
void get_diffraction_gpu(struct gpu_context *gctx, struct image *image,
int na, int nb, int nc, UnitCell *ucell)
static void do_panels(struct gpu_context *gctx, struct image *image,
int *n_inf, int *n_neg, int *n_nan, double k, double frac,
double xo, double yo)
{
cl_int err;
double ax, ay, az;
double bx, by, bz;
double cx, cy, cz;
int i;
cl_float16 cell;
cl_int4 ncells;
int n_inf = 0;
int n_neg = 0;
int n_nan = 0;
if ( gctx == NULL ) {
ERROR("GPU setup failed.\n");
return;
}
cell_get_cartesian(ucell, &ax, &ay, &az, &bx, &by, &bz, &cx, &cy, &cz);
cell.s[0] = ax; cell.s[1] = ay; cell.s[2] = az;
cell.s[3] = bx; cell.s[4] = by; cell.s[5] = bz;
cell.s[6] = cx; cell.s[7] = cy; cell.s[8] = cz;
ncells.s[0] = na;
ncells.s[1] = nb;
ncells.s[2] = nc;
ncells.s[3] = 0; /* unused */
/* Ensure all required LUTs are available */
check_sinc_lut(gctx, na);
check_sinc_lut(gctx, nb);
check_sinc_lut(gctx, nc);
if ( set_arg_float(gctx, 2, 1.0/image->lambda) ) return;
if ( set_arg_mem(gctx, 9, gctx->intensities) ) return;
if ( set_arg_mem(gctx, 10, gctx->sinc_luts[na-1]) ) return;
if ( set_arg_mem(gctx, 11, gctx->sinc_luts[nb-1]) ) return;
if ( set_arg_mem(gctx, 12, gctx->sinc_luts[nc-1]) ) return;
if ( set_arg_mem(gctx, 13, gctx->flags) ) return;
/* Unit cell */
err = clSetKernelArg(gctx->kern, 8, sizeof(cl_float16), &cell);
if ( err != CL_SUCCESS ) {
ERROR("Couldn't set unit cell: %s\n", clError(err));
return;
}
/* Allocate memory for the result */
image->data = calloc(image->width * image->height, sizeof(float));
image->twotheta = calloc(image->width * image->height, sizeof(double));
if ( set_arg_float(gctx, 1, k) ) return;
/* Iterate over panels */
for ( i=0; i<image->det->n_panels; i++ ) {
......@@ -225,14 +181,12 @@ void get_diffraction_gpu(struct gpu_context *gctx, struct image *image,
size_t dims[2];
size_t ldims[2] = {1, 1};
struct panel *p;
cl_mem tt;
size_t tt_size;
cl_mem diff;
size_t diff_size;
float *diff_ptr;
float *tt_ptr;
int pan_width, pan_height;
int fs, ss;
cl_int err;
p = &image->det->panels[i];
......@@ -247,25 +201,19 @@ void get_diffraction_gpu(struct gpu_context *gctx, struct image *image,
ERROR("Couldn't allocate diffraction memory\n");
return;
}
tt_size = pan_width * pan_height * sizeof(cl_float);
tt = clCreateBuffer(gctx->ctx, CL_MEM_WRITE_ONLY, tt_size,
NULL, &err);
if ( err != CL_SUCCESS ) {
ERROR("Couldn't allocate twotheta memory\n");
return;
}
if ( set_arg_mem(gctx, 0, diff) ) return;
if ( set_arg_mem(gctx, 1, tt) ) return;
if ( set_arg_int(gctx, 3, pan_width) ) return;
if ( set_arg_float(gctx, 4, p->cnx) ) return;
if ( set_arg_float(gctx, 5, p->cny) ) return;
if ( set_arg_float(gctx, 6, p->res) ) return;
if ( set_arg_float(gctx, 7, p->clen) ) return;
if ( set_arg_float(gctx, 14, p->fsx) ) return;
if ( set_arg_float(gctx, 15, p->fsy) ) return;
if ( set_arg_float(gctx, 16, p->ssx) ) return;
if ( set_arg_float(gctx, 17, p->ssy) ) return;
if ( set_arg_int(gctx, 2, pan_width) ) return;
if ( set_arg_float(gctx, 3, p->cnx) ) return;
if ( set_arg_float(gctx, 4, p->cny) ) return;
if ( set_arg_float(gctx, 5, p->res) ) return;
if ( set_arg_float(gctx, 6, p->clen) ) return;
if ( set_arg_float(gctx, 13, p->fsx) ) return;
if ( set_arg_float(gctx, 14, p->fsy) ) return;
if ( set_arg_float(gctx, 15, p->ssx) ) return;
if ( set_arg_float(gctx, 16, p->ssy) ) return;
if ( set_arg_float(gctx, 17, xo) ) return;
if ( set_arg_float(gctx, 18, yo) ) return;
dims[0] = pan_width;
dims[1] = pan_height;
......@@ -288,43 +236,124 @@ void get_diffraction_gpu(struct gpu_context *gctx, struct image *image,
clError(err));
return;
}
tt_ptr = clEnqueueMapBuffer(gctx->cq, tt, CL_TRUE, CL_MAP_READ,
0, tt_size, 0, NULL, NULL, &err);
if ( err != CL_SUCCESS ) {
ERROR("Couldn't map tt buffer\n");
return;
}
for ( fs=0; fs<pan_width; fs++ ) {
for ( ss=0; ss<pan_height; ss++ ) {
float val, tt;
float val;
int tfs, tss;
val = diff_ptr[fs + pan_width*ss];
if ( isinf(val) ) n_inf++;
if ( val < 0.0 ) n_neg++;
if ( isnan(val) ) n_nan++;
tt = tt_ptr[fs + pan_width*ss];
if ( isinf(val) ) (*n_inf)++;
if ( val < 0.0 ) (*n_neg)++;
if ( isnan(val) ) (*n_nan)++;
tfs = p->min_fs + fs;
tss = p->min_ss + ss;
image->data[tfs + image->width*tss] = val;
image->twotheta[tfs + image->width*tss] = tt;
image->data[tfs + image->width*tss] += frac*val;
}
}
clEnqueueUnmapMemObject(gctx->cq, diff, diff_ptr,
0, NULL, NULL);
clEnqueueUnmapMemObject(gctx->cq, tt, tt_ptr,
0, NULL, NULL);
clReleaseMemObject(diff);
clReleaseMemObject(tt);
}
}
void get_diffraction_gpu(struct gpu_context *gctx, struct image *image,
int na, int nb, int nc, UnitCell *ucell)
{
double ax, ay, az;
double bx, by, bz;
double cx, cy, cz;
cl_float16 cell;
cl_int4 ncells;
cl_int err;
int n_inf = 0;
int n_neg = 0;
int n_nan = 0;
int fs, ss;
const int nkstep = 10;
const int nxs = 4;
const int nys = 4;
int kstep;
double klow, khigh, kinc, w;
double frac;
int xs, ys;
int n, ntot;
if ( gctx == NULL ) {
ERROR("GPU setup failed.\n");
return;
}
cell_get_cartesian(ucell, &ax, &ay, &az, &bx, &by, &bz, &cx, &cy, &cz);
cell.s[0] = ax; cell.s[1] = ay; cell.s[2] = az;
cell.s[3] = bx; cell.s[4] = by; cell.s[5] = bz;
cell.s[6] = cx; cell.s[7] = cy; cell.s[8] = cz;
ncells.s[0] = na;
ncells.s[1] = nb;
ncells.s[2] = nc;
ncells.s[3] = 0; /* unused */
/* Ensure all required LUTs are available */
check_sinc_lut(gctx, na);
check_sinc_lut(gctx, nb);
check_sinc_lut(gctx, nc);
if ( set_arg_mem(gctx, 8, gctx->intensities) ) return;
if ( set_arg_mem(gctx, 9, gctx->sinc_luts[na-1]) ) return;
if ( set_arg_mem(gctx, 10, gctx->sinc_luts[nb-1]) ) return;
if ( set_arg_mem(gctx, 11, gctx->sinc_luts[nc-1]) ) return;
if ( set_arg_mem(gctx, 12, gctx->flags) ) return;
/* Unit cell */
err = clSetKernelArg(gctx->kern, 7, sizeof(cl_float16), &cell);
if ( err != CL_SUCCESS ) {
ERROR("Couldn't set unit cell: %s\n", clError(err));
return;
}
/* Allocate memory for the result */
image->data = calloc(image->width * image->height, sizeof(float));
w = image->lambda * image->bw;
klow = 1.0 / (image->lambda + (w/2.0)); /* Smallest k */
khigh = 1.0 / (image->lambda - (w/2.0)); /* Largest k */
kinc = (khigh-klow) / (nkstep+1);
ntot = nkstep * nxs * nys;
frac = 1.0 / ntot;
n = 0;
for ( xs=0; xs<nxs; xs++ ) {
for ( ys=0; ys<nys; ys++ ) {
double xo, yo;
xo = (1.0/nxs) * xs;
yo = (1.0/nys) * ys;
for ( kstep=0; kstep<nkstep; kstep++ ) {
double k;
k = klow + kstep*kinc;
do_panels(gctx, image, &n_inf, &n_neg, &n_nan, k, frac,
xo, yo);
n++;
progress_bar(n, ntot, "Simulating");
}
}
}
if ( n_neg + n_inf + n_nan ) {
ERROR("WARNING: The GPU calculation produced %i negative"
......@@ -332,6 +361,25 @@ void get_diffraction_gpu(struct gpu_context *gctx, struct image *image,
n_neg, n_inf, n_nan);
}
/* Calculate "2theta" values for detector geometry */
image->twotheta = calloc(image->width * image->height, sizeof(double));
for ( fs=0; fs<image->width; fs++ ) {
for ( ss=0; ss<image->height; ss++ ) {
struct rvec q;
double twotheta, k;
int idx;
/* Calculate k this time round */
k = 1.0/image->lambda;
q = get_q(image, fs, ss, &twotheta, k);
idx = fs + image->width*ss;
image->twotheta[idx] = twotheta;
}
}
}
......
src/pattern_sim.c
View file @ 51f5ed04
......@@ -497,6 +497,8 @@ int main(int argc, char *argv[])
image.width = image.det->max_fs + 1;
image.height = image.det->max_ss + 1;
image.lambda = ph_en_to_lambda(eV_to_J(image.beam->photon_energy));
image.bw = image.beam->bandwidth;
image.div = image.beam->divergence;
/* Load unit cell */
input_cell = load_cell_from_pdb(filename);
......
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