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Connor Hainje
pidanalysis
Commits
84ead851
Commit
84ead851
authored
Jan 03, 2022
by
connor.hainje@pnnl.gov
Browse files
Add support for specifying color lims
parent
692656e1
Changes
1
Hide whitespace changes
Inline
Side-by-side
packages/pidplots/pidplots/eff_pur.py
View file @
84ead851
...
...
@@ -182,13 +182,19 @@ def plot_auc_1D(df, bin_by="p", figsize=None, title=None):
# *** 2D PLOT METHODS ***
def
_subplot_2D
(
ax
,
data
,
particle
=
"max"
,
cell_fontsize
=
10
,
color_list
=
None
):
def
_subplot_2D
(
ax
,
data
,
particle
=
"max"
,
cell_fontsize
=
10
,
color_list
=
None
,
vlims
=
None
):
if
particle
==
"min"
or
particle
==
"max"
:
cmap
=
colors
.
make_colormap
(
color_list
,
detectors
=
False
)
idx
=
np
.
argmin
(
data
,
axis
=
2
)
if
particle
==
"min"
else
np
.
argmax
(
data
,
axis
=
2
)
val
=
np
.
take_along_axis
(
data
,
np
.
expand_dims
(
idx
,
2
),
axis
=
2
).
squeeze
()
vmax
=
len
(
const
.
PARTICLES
)
-
0.5
im
=
ax
.
imshow
(
idx
,
cmap
=
cmap
,
vmin
=-
0.5
,
vmax
=
vmax
,
aspect
=
"auto"
)
if
vlims
is
None
:
vmin
=
-
0.5
vmax
=
len
(
const
.
PARTICLES
)
-
0.5
else
:
vmin
,
vmax
=
vlims
im
=
ax
.
imshow
(
idx
,
cmap
=
cmap
,
vmin
=
vmin
,
vmax
=
vmax
,
aspect
=
"auto"
)
connected_region_borders
(
ax
,
idx
)
elif
particle
in
const
.
PARTICLES
:
...
...
@@ -196,7 +202,13 @@ def _subplot_2D(ax, data, particle="max", cell_fontsize=10, color_list=None):
color_list
=
colors
.
fill_color_list
(
color_list
,
detectors
=
False
)
cmap
=
colors
.
make_linear_colormap
(
color_list
[
index
])
val
=
data
[:,
:,
index
]
im
=
ax
.
imshow
(
val
,
cmap
=
cmap
,
aspect
=
"auto"
)
if
vlims
is
None
:
vmin
,
vmax
=
None
,
None
else
:
vmin
,
vmax
=
vlims
im
=
ax
.
imshow
(
val
,
cmap
=
cmap
,
vmin
=
vmin
,
vmax
=
vmax
,
aspect
=
"auto"
)
else
:
raise
ValueError
(
"particle not understood"
)
...
...
@@ -207,24 +219,45 @@ def _subplot_2D(ax, data, particle="max", cell_fontsize=10, color_list=None):
return
im
def
subplot_efficiency_2D
(
ax
,
df
,
particle
=
"max"
,
color_list
=
None
,
cell_fontsize
=
10
):
def
subplot_efficiency_2D
(
ax
,
df
,
particle
=
"max"
,
color_list
=
None
,
cell_fontsize
=
10
,
vlims
=
None
):
effs
=
compute_efficiency_2D
(
df
)
return
_subplot_2D
(
ax
,
effs
,
particle
=
particle
,
color_list
=
color_list
,
cell_fontsize
=
cell_fontsize
ax
,
effs
,
particle
=
particle
,
color_list
=
color_list
,
cell_fontsize
=
cell_fontsize
,
vlims
=
vlims
,
)
def
subplot_purity_2D
(
ax
,
df
,
particle
=
"max"
,
color_list
=
None
,
cell_fontsize
=
10
):
def
subplot_purity_2D
(
ax
,
df
,
particle
=
"max"
,
color_list
=
None
,
cell_fontsize
=
10
,
vlims
=
None
):
purs
=
compute_purity_2D
(
df
)
return
_subplot_2D
(
ax
,
purs
,
particle
=
particle
,
color_list
=
color_list
,
cell_fontsize
=
cell_fontsize
ax
,
purs
,
particle
=
particle
,
color_list
=
color_list
,
cell_fontsize
=
cell_fontsize
,
vlims
=
vlims
,
)
def
subplot_auc_2D
(
ax
,
df
,
particle
=
"max"
,
color_list
=
None
,
cell_fontsize
=
10
):
def
subplot_auc_2D
(
ax
,
df
,
particle
=
"max"
,
color_list
=
None
,
cell_fontsize
=
10
,
vlims
=
None
):
aucs
=
compute_auc_2D
(
df
)
return
_subplot_2D
(
ax
,
aucs
,
particle
=
particle
,
color_list
=
color_list
,
cell_fontsize
=
cell_fontsize
ax
,
aucs
,
particle
=
particle
,
color_list
=
color_list
,
cell_fontsize
=
cell_fontsize
,
vlims
=
vlims
,
)
...
...
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